List of Publications

A more up-to-date and more detailed listing of my papers can be found on my ORCID page.

Witney, A. A., et al.2014Genome sequencing and characterization of an extensively drug-resistant sequence type 111 serotype O12 hospital outbreak strain of Pseudomonas aeruginosaClinical Microbiology and InfectionPubmed
Balhana, R. J., et al.2013bkaR is a TetR-type repressor that controls an operon associated with branched-chain keto-acid metabolism in mycobacteriaFEMS Microbiology LettersPubmed
Afonso-Barroso, A., et al.2012Lipoarabinomannan mannose caps do not affect mycobacterial virulence or the induction of protective immunity in experimental animal models of infection and have minimal impact on in vitro inflammatory responsesCellular MicrobiologyPubmed
Uhia, I., et al.2012Cholesterol metabolism in Mycobacterium smegmatisEnviron. Microbiol. Rep.Pubmed
Witney, A. A., et al.2012BmuG@Sbase--a microbial gene expression and comparative genomic databaseNucleic Acids ResearchPubmed
Balhana, R., et al.2010Rapid construction of mycobacterial mutagenesis vectors using ligation-independent cloningJournal of Microbiological MethodsPubmed
Kendall, S. L., et al.2010Cholesterol utilization in mycobacteria is controlled by two TetR-type transcriptional regulators: kstR and kstR2MicrobiologyPubmed
Movahedzadeh, F., et al.2010Inositol monophosphate phosphatase genes of Mycobacterium tuberculosisBMC MicrobiologyPubmed
Kana, B. D., et al.2010Role of the DinB homologs Rv1537 and Rv3056 in Mycobacterium tuberculosisJournal of BacteriologyPubmed
ten Bokum, A. M., et al.2008The case for hypervirulence through gene deletion in Mycobacterium tuberculosisTrends in MicrobiologyPubmed
Kendall, S. L., et al.2002Microarray analysis of bacterial gene expression: towards the regulomeComparative and Functional GenomicsPubmed
Sidders, B., et al.2008Screening of highly expressed mycobacterial genes identifies Rv3615c as a useful differential diagnostic antigen for the Mycobacterium tuberculosis complexInfection and ImmunityPubmed
Movahedzadeh, F., et al.2008Construction of a severely attenuated mutant of Mycobacterium tuberculosis for reducing risk to laboratory workersTuberculosis (Edinb)Pubmed
Tailleux, L., et al.2008Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophagesPLoS OnePubmed
Sidders, B., et al.2007Quantification of global transcription patterns in prokaryotes using spotted microarraysGenome Biol.Pubmed
Appelmelk, B. J., et al.2008The mannose cap of mycobacterial lipoarabinomannan does not dominate the Mycobacterium-host interactionCellular MicrobiologyPubmed
Laval, F., et al.2008Investigating the function of the putative mycolic acid methyltransferase UmaA: divergence between the Mycobacterium smegmatis and Mycobacterium tuberculosis proteinsJournal of Biological ChemistryPubmed
Campbell, D. R., et al.2007Mycobacterial cells have dual nickel-cobalt sensors: sequence relationships and metal sites of metal-responsive repressors are not congruentJournal of Biological ChemistryPubmed
Kendall, S. L., et al.2007A highly conserved transcriptional repressor controls a large regulon involved in lipid degradation in Mycobacterium smegmatis and Mycobacterium tuberculosisMolecular MicrobiologyPubmed
Waddell, S. J., et al.2007RNA profiling in host-pathogen interactionsCurrent Opinion in MicrobiologyPubmed
Bacon, J., et al.2007Lipid composition and transcriptional response of Mycobacterium tuberculosis grown under iron-limitation in continuous culture: identification of a novel wax esterMicrobiologyPubmed
Rison, S. C., et al.2007Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosisMicrobiologyPubmed
Hu, Y., et al.2006Deletion of the Mycobacterium tuberculosis alpha-crystallin-like hspX gene causes increased bacterial growth in vivoInfection and ImmunityPubmed
Warner, D. F., et al.2006A derivative of Mycobacterium smegmatis mc(2)155 that lacks the duplicated chromosomal regionTuberculosis (Edinb)Pubmed
Spencer, J. S., et al.2005Identification of specific proteins and peptides in Mycobacterium leprae suitable for the selective diagnosis of leprosyJournal of ImmunologyPubmed
Sardiwal, S., et al.2005A GAF domain in the hypoxia/NO-inducible Mycobacterium tuberculosis DosS protein binds haemJournal of Molecular BiologyPubmed
Edwards, M. T., et al.2005A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic contextNucleic Acids ResearchPubmed
Williams, A., et al.2005Evaluation of vaccines in the EU TB Vaccine Cluster using a guinea pig aerosol infection model of tuberculosisTuberculosis (Edinb)Pubmed
Kendall, S. L., et al.2004What do microarrays really tell us about M. tuberculosis?Trends in MicrobiologyPubmed
Movahedzadeh, F., et al.2004The Mycobacterium tuberculosis Rv1099c gene encodes a GlpX-like class II fructose 1,6-bisphosphataseMicrobiologyPubmed
Hu, Y., et al.2004The Mycobacterium tuberculosis sigJ gene controls sensitivity of the bacterium to hydrogen peroxideFEMS Microbiology LettersPubmed
Kendall, S. L., et al.2004The Mycobacterium tuberculosis dosRS two-component system is induced by multiple stressesTuberculosis (Edinb)Pubmed
Bacon, J., et al.2004The influence of reduced oxygen availability on pathogenicity and gene expression in Mycobacterium tuberculosisTuberculosis (Edinb)Pubmed
Movahedzadeh, F., et al.2004The Mycobacterium tuberculosis ino1 gene is essential for growth and virulenceMolecular MicrobiologyPubmed
Parish, T., et al.2003The senX3-regX3 two-component regulatory system of Mycobacterium tuberculosis is required for virulenceMicrobiologyPubmed
Parish, T., et al.2003Deletion of two-component regulatory systems increases the virulence of Mycobacterium tuberculosisInfection and ImmunityPubmed
Pashley, C. A., et al.2003Gene replacement in mycobacteria by using incompatible plasmidsApplied and Environmental MicrobiologyPubmed
Wernisch, L., et al.2003Analysis of whole-genome microarray replicates using mixed modelsBioinformaticsPubmed
Parish, T. and Stoker, N. G.2002The common aromatic amino acid biosynthesis pathway is essential in Mycobacterium tuberculosisMicrobiologyPubmed
Norman, R. A., et al.2002Crystal structure of inositol 1-phosphate synthase from Mycobacterium tuberculosis, a key enzyme in phosphatidylinositol synthesisStructurePubmed
Parish, T., et al.2001Use of the mycobacteriophage L5 excisionase in Mycobacterium tuberculosis to demonstrate gene essentialityTuberculosis (Edinb)Pubmed
Dorrell, N., et al.2001Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversityGenome ResearchPubmed
Parish, T., et al.2001amiA is a negative regulator of acetamidase expression in Mycobacterium smegmatisBMC MicrobiologyPubmed
Smith, D. A., et al.2001Characterization of auxotrophic mutants of Mycobacterium tuberculosis and their potential as vaccine candidatesInfection and ImmunityPubmed
Khan, M. M., et al.2000Sequence diversity of a fragment of the 16S RNA gene from Helicobacter pyloriMicrobiosPubmed
Parish, T. and Stoker, N. G.2000glnE is an essential gene in Mycobacterium tuberculosisJournal of BacteriologyPubmed
Parish, T. and Stoker, N. G.1999Mycobacteria: bugs and bugbears (two steps forward and one step back)Molecular BiotechnologyPubmed
Parish, T. and Stoker, N. G.2000Use of a flexible cassette method to generate a double unmarked Mycobacterium tuberculosis tlyA plcABC mutant by gene replacementMicrobiologyPubmed
McNerney, R., et al.2000Rapid screening of Mycobacterium tuberculosis for susceptibility to rifampicin and streptomycinInternational Journal of Tuberculosis and Lung DiseasePubmed
Parish, T., et al.1999Production of mutants in amino acid biosynthesis genes of Mycobacterium tuberculosis by homologous recombinationMicrobiologyPubmed
Hinds, J., et al.1999Enhanced gene replacement in mycobacteriaMicrobiologyPubmed
Parish, T. and Stoker, N. G.1998Electroporation of mycobacteriaMethods in Molecular BiologyPubmed
Parish, T. and Stoker, N. G.1998Mycobacteria. Bugs and bugbearsMethods in Molecular BiologyPubmed
McNerney, R., et al.1998Inactivation of mycobacteriophage D29 using ferrous ammonium sulphate as a tool for the detection of viable Mycobacterium smegmatis and M. tuberculosisResearch in MicrobiologyPubmed
Wren, B. W., et al.1998Characterization of a haemolysin from Mycobacterium tuberculosis with homology to a virulence factor of Serpulina hyodysenteriaeMicrobiologyPubmed
Parish, T., et al.1997A Mycobacterium smegmatis mutant with a defective inositol monophosphate phosphatase gene homolog has altered cell envelope permeabilityJournal of BacteriologyPubmed
Stolt, P. and Stoker, N. G.1997Mutational analysis of the regulatory region of the Mycobacterium plasmid pAL5000Nucleic Acids ResearchPubmed
Parish, T. and Stoker, N. G.1997Development and use of a conditional antisense mutagenesis system in mycobacteriaFEMS Microbiology LettersPubmed
Papavinasasundaram, K. G., et al.1997Mycobacterial recA is cotranscribed with a potential regulatory gene called recXMolecular MicrobiologyPubmed
Warndorff, D. K., et al.1996Polymerase chain reaction of nasal swabs from tuberculosis patients and their contactsInternational Journal of Leprosy and Other Mycobacterial DiseasesPubmed
Stolt, P. and Stoker, N. G.1996Protein-DNA interactions in the ori region of the Mycobacterium fortuitum plasmid pAL5000Journal of BacteriologyPubmed
Stolt, P. and Stoker, N. G.1996Functional definition of regions necessary for replication and incompatibility in the Mycobacterium fortuitum plasmid pAL5000MicrobiologyPubmed
Miller, R. F., et al.1995Transmission of tuberculosis in patients with HIV infectionBritish Medical JournalPubmed
Parish, T. and Stoker, N. G.1995Electroporation of mycobacteriaMethods in Molecular BiologyPubmed
Drobniewski, F. A., et al.1994Molecular biology in the diagnosis and epidemiology of tuberculosisJournal of Hospital InfectionPubmed
Jamil, S., et al.1994A colorimetric PCR method for the detection of M. leprae in skin biopsies from leprosy patientsInternational Journal of Leprosy and Other Mycobacterial DiseasesPubmed
Stoker, N.1994Tuberculosis in a changing worldBritish Medical JournalPubmed
Kent, R. J., et al.1994Transmission of tuberculosis in British centre for patients infected with HIVBritish Medical JournalPubmed
Norman, E., et al.1994Lipid synthesis in mycobacteria: characterization of the biotin carboxyl carrier protein genes from Mycobacterium leprae and M. tuberculosisJournal of BacteriologyPubmed
De Smet, K. A., et al.1993Tropist3: a cosmid vector for simplified mapping of both G+C-rich and A+T-rich genomic DNAGenePubmed
Andersen, A. B., et al.1993Polymerase chain reaction for detection of Mycobacterium tuberculosis in sputumEuropean Journal of Clinical Microbiology and Infectious DiseasesPubmed
Godfrey-Faussett, P., et al.1993DNA fingerprints of Mycobacterium tuberculosis do not change during the development of rifampicin resistanceTubercle and Lung DiseasePubmed
Jamil, S., et al.1993Use of polymerase chain reaction to assess efficacy of leprosy chemotherapyLancetPubmed
Vega-Lopez, F., et al.1993Sequence and immunological characterization of a serine-rich antigen from Mycobacterium lepraeInfection and ImmunityPubmed
Wilson, S. M., et al.1993Progress toward a simplified polymerase chain reaction and its application to diagnosis of tuberculosisJournal of Clinical MicrobiologyPubmed
Hinshelwood, S. and Stoker, N. G.1992Cloning of mycobacterial histidine synthesis genes by complementation of a Mycobacterium smegmatis auxotrophMolecular MicrobiologyPubmed
Godfrey-Faussett, P. and Stoker, N. G.1992'Aspects of tuberculosis in Africa. 3. Genetic ''fingerprinting'' for clues to the pathogenesis of tuberculosis'Transactions of the Royal Society of Tropical Medicine and HygienePubmed
Hussain, R., et al.1992Recognition of Mycobacterium leprae recombinant 18-kDa proteins in leprosyInternational Journal of Leprosy and Other Mycobacterial DiseasesPubmed
Baily, G. G., et al.1992Detection of Brucella melitensis and Brucella abortus by DNA amplificationJournal of Tropical Medicine and HygienePubmed
Godfrey-Faussett, P., et al.1992Evidence of transmission of tuberculosis by DNA fingerprintingBritish Medical JournalPubmed
Stoker, N. G., et al.1992Stereolithographic models for surgical planning: preliminary reportJournal of Oral and Maxillofacial SurgeryPubmed
Hinshelwood, S. and Stoker, N. G.1992An Escherichia coli-Mycobacterium shuttle cosmid vector, pMSC1GenePubmed
Villarreal-Ramos, B., et al.1991Screening gene expression libraries for epitopes recognized in Mycobacterium leprae by mouse T cellsEuropean Journal of ImmunologyPubmed
Godfrey-Faussett, P., et al.1991Tuberculous pericarditis confirmed by DNA amplificationLancetPubmed
Stoker, N. G.1990The polymerase chain reaction and infectious diseases: hopes and realitiesTransactions of the Royal Society of Tropical Medicine and HygienePubmed
Lee, S. P., et al.1989Cellular immune responses of leprosy contacts to fractionated Mycobacterium leprae antigensInfection and ImmunityPubmed
Dockrell, H. M., et al.1989T-cell recognition of the 18-kilodalton antigen of Mycobacterium lepraeInfection and ImmunityPubmed
Stoker, N. G., et al.1989High level expression of genes cloned in phage lambda gt11GenePubmed
Vega-Lopez, F., et al.1988Recognition of mycobacterial antigens by sera from patients with leprosyJournal of Clinical MicrobiologyPubmed
Jackson, M. E., et al.1985An inner membrane protein N-terminal signal sequence is able to promote efficient localisation of an outer membrane protein in Escherichia coliEMBO JournalPubmed
Stoker, N. G., et al.1985'A highly polymorphic region 3'' to the human type II collagen gene'Nucleic Acids ResearchPubmed
Cheah, K. S., et al.1985Identification and characterization of the human type II collagen gene (COL2A1)Proceedings of the National Academy of Sciences of the United States of AmericaPubmed
Stoker, N. G., et al.1983Identification of the rodA gene product of Escherichia coliJournal of BacteriologyPubmed
Stoker, N. G., et al.1983Organization and subcloning of the dacA-rodA-pbpA cluster of cell shape genes in Escherichia coliJournal of BacteriologyPubmed
Stoker, N. G., et al.1982Versatile low-copy-number plasmid vectors for cloning in Escherichia coliGenePubmed
Spratt, B. G., et al.1980Defective and plaque-forming lambda transducing bacteriophage carrying penicillin-binding protein-cell shape genes: genetic and physical mapping and identification of gene products from the lip-dacA-rodA-pbpA-leuS region of the Escherichia coli chromosomeJournal of BacteriologyPubmed